FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926106

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926106
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491772
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24800.5042987400665349No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17640.35870281349893857No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13630.27716096077043834No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11420.23222143594999306No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10690.21737715852061523No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10670.2169704659883035No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10470.21290354066518632No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10330.21005669293900428No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9640.19602580057424984No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8680.1765045590232872No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8010.16288035919084454No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7810.1588134338677273No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7610.15474650854461008No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7460.1516963145522722No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7000.1423423863091026No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6750.13725872965520608No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6140.12485460741969857No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5830.11855087316886687No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5650.11489064037806139No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5520.11224713891803519No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5350.10879025239338555No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5330.10838355986107383No Hit

[OK]Adapter Content

Adapter graph