FastQCFastQC Report
Wed 31 May 2023
EGAF00007926108

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926108
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497787
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26160.525525977978533No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18040.36240400010446233No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12870.2585443171476957No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12210.24528563421704463No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11060.22218338365606172No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10950.21997360316761988No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10710.21515226392011041No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10630.21354515083760725No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9260.18602333929974066No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9020.18120200005223117No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8600.17276465636908958No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7720.15508641246155486No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7640.15347929937905166No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7630.15327841024373878No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6950.13961794904246194No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6430.1291717140061914No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6080.12214059427024009No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6040.12133703772898849No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5880.11812281156398219No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5830.11711836588741771No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5770.11591303107554034No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5360.10767657652771166No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)