FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926110

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926110
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475795
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46440.9760506100316313No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25480.535524753307622No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17230.36213074958753244No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12630.2654504566042098No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10510.2208934520118959No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10380.2181611828623672No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10360.21774083376243972No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10160.21353734276316483No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8950.18810622221755166No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8920.18747569856766044No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8210.17255330552023454No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7440.1563698651730262No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6930.1456509631248752No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6910.14523061402494772No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6810.14312886852531026No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6060.12736577727802942No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5940.12484368267846446No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5740.12064019167918956No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5470.11496547883016846No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5230.10992128963103857No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4970.10445675133198122No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG4790.1006736094326338No Hit

[OK]Adapter Content

Adapter graph