FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926112

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926112
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501650
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49890.9945180903020033No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA47620.9492674175221769No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27280.5438054420412638No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25010.49855476926143727No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22470.4479218578690322No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19150.38174025715140036No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16760.3340974783215389No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13730.2736968005581581No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12750.2541612678162065No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12560.25037376657031796No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11210.2234625735074255No Hit
ATGTCCAACATGGACATCGATGGTATTAACA11140.2220671783115718No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11040.22007375660320938No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10210.20352835642380146No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9880.19695006478620553No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG9720.19376059005282567No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8850.17641782119007277No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8420.1678461078441144No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8190.1632612379148809No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7480.14910794378550785No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7080.1411342569520582No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6900.13754609787700586No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6630.1321638592644274No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6460.1287750423602113No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6130.12219675072261536No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6000.11960530250174424No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5890.1174125386225456No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5830.11621648559752816No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5750.11462174823083825No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5640.11242898435163959No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5210.10385727100568126No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5090.10146516495564636No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5090.10146516495564636No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5060.10086713844313766No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)