FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926114

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926114
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533314
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA49350.9253460437940876No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29920.5610203369872158No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT28180.528394154288093No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA24290.4554540102078701No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA21000.39376427395493085No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA17550.3290744289480494No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14220.2666346655066246No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13810.2589468868246474No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13260.24863401298297066No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13040.24450886344629993No Hit
ATGTCCAACATGGACATCGATGGTATTAACA12670.23757111195280828No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11190.20982010597884174No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11070.207570024413385No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10980.20588246323929243No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10870.20381988847095706No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG10740.20138230010837893No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9380.17588137569986914No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8690.1629434066984928No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8130.15244302605969465No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8110.15206801246545187No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7970.14944291730575235No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA7910.14831787652302394No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6990.13106725118785556No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6730.12619207446269928No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6340.11887930937496485No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6340.11887930937496485No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6320.11850429578072205No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6240.1170042414037509No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6220.1166292278095081No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6150.11531668022965832No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5680.10650386076495272No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5520.1035037520110104No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5430.10181619083691783No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)