FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926116

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926116
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507797
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50570.9958703970287339No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA47720.9397456070043738No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29060.5722759291606685No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25060.49350429403875956No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21690.4271391914485513No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19240.37889156493638204No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16800.3308408675120176No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13480.2654604103608332No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12640.2489183669852323No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11920.23473947266328868No Hit
ATGTCCAACATGGACATCGATGGTATTAACA10910.21484963479500666No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10390.2046093222291585No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10370.20421546405354896No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10310.20303388952672033No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9910.19515672601452944No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG9520.18747649159014332No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9380.1847194843608765No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8800.17329759726819968No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA7520.14809067402918882No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7490.1474998867657745No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7400.14572752497553157No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7190.14159201413163133No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6500.12800390707310205No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6310.12426225440481137No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6180.12170217626334932No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6110.12032367264871592No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6020.11855131085847298No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5870.1155973745414014No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5860.11540044545359661No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5490.10811406920482004No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5410.10653863650238186No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5100.10043383478043391No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)