FastQCFastQC Report
Wed 31 May 2023
EGAF00007926117

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926117
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494459
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG17340.3506863056390924No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13650.27605928904115407No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13210.26716067459587145No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12530.25340827045316194No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11730.23722897146173902No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG10310.20851071575196325No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9670.1955672765588249No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9200.18606193840136392No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG8330.16846695074819146No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG8260.16705126208644194No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8240.1666467796116564No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8060.1630064373385862No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7530.1522876517567685No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7240.1464226558723777No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7130.14419800226105703No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6410.12963663316877638No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6280.12700749708267015No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5930.11992905377392261No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5660.11446854036431736No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5540.11204164551560393No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5490.11103043932863998No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT5460.11042371561646162No Hit
GTGACGACGGCGGCGTTCACCGCCGTCCGGACCTTCGCCTTCAC5230.10577216715642752No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5090.10294078983292851No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5040.10192958364596458No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)