FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926118

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926118
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494459
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50151.014239805524826No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17330.35048406440169966No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG17190.34765268707820063No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15580.31509184785796196No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14080.2847556622490439No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12150.24572310343223602No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11990.24248724363395147No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10660.2155891590607108No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG10470.21174657555024784No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9870.19961210130668064No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA8760.17716332395608128No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8470.1712983280716905No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8330.16846695074819146No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8090.1636131610507646No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8090.1636131610507646No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8050.16280419610119343No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7630.1543100641306964No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7060.14278231359930751No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6950.14055765998798686No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6780.1371195589523095No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6130.12397387852177835No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG5990.12114250119827934No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5920.11972681253652982No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5860.11851336511217311No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5790.1170976764504236No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5760.11649095273824524No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC5750.11628871150085245No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5730.11588422902606688No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5140.10395199601989245No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)