FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926120

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926120
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472919
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA58601.2391128290468347No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA29500.623785468547468No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA26080.5514686447362022No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC13740.29053601145227825No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC12900.27277398455126567No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC12670.2679105724236074No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG10850.22942618080474667No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10830.2290032754023416No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC10620.22456276867708846No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG8980.1898845256798733No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8150.17233395148006317No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8060.1704308771692404No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT7660.16197276912113914No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6960.14717108003696194No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6800.14378783681772142No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6740.14251912061050623No Hit
GAAGAGCTGTCCAACGAAGTTCTGCCACCGC6710.14188476250689863No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6560.13871297198886068No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6140.12983195853835436No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5920.12517999911189867No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5520.11672189106379739No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5250.11101266813132904No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT5160.10910959382050625No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4780.10107439117481005No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4760.100651485772405No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)