FastQCFastQC Report
Wed 31 May 2023
EGAF00007926124

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926124
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457458
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA55921.222407302965518No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46921.0256679301706386No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA27400.5989620905088555No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA23740.5189547455722712No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12630.27609091982214756No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC11970.2616633658171898No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC11940.2610075679078735No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC11200.2448312194780723No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG10440.22821767244206023No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG8320.18187462018371087No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8080.17662823690918072No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7810.17072605572533434No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT7380.1613262856918012No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7360.16088908708559035No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6650.14536853656510543No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6450.14099655050299698No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5880.12853639022598795No Hit
GAAGAGCTGTCCAACGAAGTTCTGCCACCGC5800.1267875958011446No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5800.1267875958011446No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5450.11913662019245481No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5350.1169506271614006No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5300.11585763064587351No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5070.11082984667444881No Hit

[OK]Adapter Content

Adapter graph