FastQCFastQC Report
Sun 21 May 2023
EGAF00007926126

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926126
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492705
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49911.0129793689936168No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17040.34584589155782874No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12200.24761266883835154No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11710.23766756984402432No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11020.22366324677037985No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9450.19179833774773952No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8600.17454663541064125No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7850.15932454511320163No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6230.12644483007073198No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5980.12137079997158542No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5370.10899016652966785No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5070.10290133041069201No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA4980.10107467957499924No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)