FastQCFastQC Report
Sun 21 May 2023
EGAF00007926130

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926130
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439903
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43340.985217195609032No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18870.4289582021491102No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14590.33166402593298977No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13640.31006835597847704No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11940.27142347290198066No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11800.26824095311921037No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10300.23414252687524295No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8010.18208559614278602No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7850.17844843067676283No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7290.16571835154568165No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7040.16003528050502042No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7030.15980795766339398No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6640.15094236683996246No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6100.13866693339213418No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6000.1363937049758697No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5620.1277554369940646No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5550.12616417710267944No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5360.12184504311177691No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5340.121390397428524No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5210.11843520048738017No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5110.11616197207111569No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4920.11184283808021314No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4820.10956960966394866No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4800.10911496398069574No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA4600.10456850714816676No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4430.1007040188405171No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)