FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007926132

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926132
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447327
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42480.949640866748486No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21030.4701258810668706No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14580.3259360601975736No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14550.325265409867949No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12330.2756372854757258No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12270.27429598481647655No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11220.25082322327961426No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8100.18107558899865198No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7780.17392198548265586No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7660.17123938416415732No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7500.16766258240615925No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7070.15804992768153947No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6510.14553112152854625No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6250.1397188186717994No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6160.13770686768292548No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5580.12474096131018249No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5490.12272901032130856No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5340.11937575867318538No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5340.11937575867318538No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5220.11669315735468684No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4950.1106573043880651No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4910.10976310394856557No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4840.10819825317944143No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4810.1075276028498168No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA4500.10059754944369555No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)