FastQCFastQC Report
Wed 31 May 2023
EGAF00007926136

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926136
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405752
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11290.2782487825075416No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10230.2521244504032019No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6900.17005461464145588No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6400.15773181647903153No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6070.14959876969183145No Hit
GGTCGCTGGAACCCGCAGCCGGGCGTGTACC4890.12051696602851003No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG4500.11090518346181903No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)