FastQCFastQC Report
Wed 31 May 2023
EGAF00007926137

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926137
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences386544
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10480.27112049339790556No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6320.1635001448735461No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5110.13219711080756652No Hit
CAGCGGATGAACACGGGATTTAGCGGTCCACAGTTCTTCAGGTT4670.12081418932902852No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG4490.11615753963326297No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)