FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007926146

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926146
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences406679
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39980.9830849392272529No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7400.18196169460434397No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7270.17876507023967306No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6300.15491333459559015No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6040.14852008586624832No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)