FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926165

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926165
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences383973
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT9730.253403234081563No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7960.20730624288686963No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7770.2023579782953489No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7290.18985709932729647No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6800.17709578538074291No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC5630.14662489289611508No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5080.13230096907855501No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5080.13230096907855501No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5030.13099879418604954No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4680.12188356993851131No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG3960.10313225148643264No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA3890.10130920663692498No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG3870.10078833667992282No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)