FastQCFastQC Report
Wed 31 May 2023
EGAF00007926167

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926167
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences366786
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT9340.25464439755061535No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8000.21811083301979903No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7870.21456653198322728No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6980.19030170180977463No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5960.16249257059975025No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC5390.14695217374708958No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4530.12350525919746118No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4400.11996095816088946No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4180.11396291025284498No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4130.11259971754647123No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG3680.10033098318910755No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG3670.10005834464783281No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)