FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926168

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926168
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences366786
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37951.0346632641376716No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18210.4964747836613175No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT9810.26745840899052853No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8880.2421030246519769No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7980.21756555593724952No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6400.1744886664158392No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5280.14395314979306734No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4770.13004858418805518No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4690.12786747585785718No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4450.12132415086726318No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4380.11941568107833997No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG3970.10823750088607527No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT3900.10632903109715201No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC3830.10442056130822877No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)