FastQCFastQC Report
Sun 21 May 2023
EGAF00007926170

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926170
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435670
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46371.0643376867812793No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20370.4675557187779742No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10420.23917185025363236No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10180.2336630936259095No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10090.23159730989051347No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10050.230679183785893No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9940.2281543369981867No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9800.22494089563201508No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8890.2040535267518994No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8640.19831523859802144No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6990.16044253678242706No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC6300.14460486147772397No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6190.1420800146900177No Hit
ATGGCATCCACCACCCCGATCACCATGGAAG5930.13611219500998464No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5490.12601280785915944No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4620.10604356508366423No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4600.105584502031354No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG4370.1003052769297863No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)