FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926172

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926172
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences413788
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42781.0338627509739287No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42181.0193625721383897No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19830.479230910514563No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9880.23876961149187506No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9700.23441955784121335No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9620.23248620066314152No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9620.23248620066314152No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9370.22644445948166694No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8410.2032441733448046No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8160.19720243216333No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6210.15007685094782836No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6190.1495935116533104No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC5920.14306843117731785No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5530.13364331493421752No Hit
ATGGCATCCACCACCCCGATCACCATGGAAG5180.12518487728015312No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4670.11285972526994499No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4660.11261805562268602No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)