FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007926174

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926174
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435920
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46801.0735914846760874No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20450.4691227748210681No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11460.2628922738117086No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10010.22962928977794092No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10010.22962928977794092No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9860.2261882914296201No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9390.21540649660488162No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9260.21242429803633697No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9210.2112772985868967No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8370.19200770783630022No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6680.1532391264452193No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6470.14842172875757018No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC6220.14268673151036887No Hit
ATGGCATCCACCACCCCGATCACCATGGAAG5500.12616993943842908No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5400.12387594053954855No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4880.11194714626536978No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4830.11080014681592953No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4480.10277115066984767No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4440.10185355111029548No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)