FastQCFastQC Report
Sun 21 May 2023
EGAF00007926178

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926178
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393278
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40111.0198892386556075No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26200.6661954139311124No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA16290.4142108127075504No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8680.220709014997025No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7890.2006214433555907No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT6860.1744313183041004No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6510.16553176124776875No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6200.15764929642644643No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6090.15485229278017076No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5780.14696982795884844No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5400.1373074517262598No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA5370.1365446325500028No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5220.1327305366687178No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5100.1296792599636898No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5040.1281536216111758No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4840.12306816043612914No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA4210.10704895773473219No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA3950.10043785820717152No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)