FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411975
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT16290.395412342981977No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12600.3058438012015292No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10840.2631227623035378No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8540.20729413192548093No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8340.2024394684143455No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG6840.16602949208083015No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6380.15486376600521876No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5860.14224164087626678No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA5750.1395715759451423No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5630.13665877783846106No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5590.135687845136234No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5500.1335032465562231No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5490.1332605133806663No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5490.1332605133806663No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4890.11869652284726014No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4220.1024334000849566No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4170.10121973420717276No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)