FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926180

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926180
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411975
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27810.6750409612233752No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA16570.40220887189756666No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9820.23836397839674736No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9320.22622731961890893No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8610.2089932641543783No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT7160.17379695369864676No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7040.17088415559196554No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6740.16360216032526245No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6450.15656289823411615No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6040.14661083803628863No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5690.1381151768918017No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5640.13690151101401785No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA5620.1364160446629043No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5610.13617331148734751No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5520.1339887129073366No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5210.12646398446507676No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4270.10364706596274047No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)