FastQCFastQC Report
Wed 31 May 2023
EGAF00007926182

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926182
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409642
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41341.009173864008085No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16880.4120671220236206No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15370.37520566738762134No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9820.239721512930803No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8080.19724539964163829No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7670.18723666030338687No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7520.18357492639914852No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7390.18040142368214196No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6280.1533045927907783No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4440.1083873235654547No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC4290.10472558966121638No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4280.1044814740676005No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4150.10130797135059393No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)