FastQCFastQC Report
Wed 31 May 2023
EGAF00007926186

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926186
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415136
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41841.0078624836198258No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17230.41504470824019113No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14580.35121020581207124No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9260.22305943112618515No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8530.20547483234409927No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7430.17897749171355892No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7220.17391890850227396No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7160.1724735990133354No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6640.15994758344253449No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5230.12598281045247822No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4350.10478493794804594No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4270.10285785862946119No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)