FastQCFastQC Report
Sun 21 May 2023
EGAF00007926188

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926188
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences400468
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA25540.6377538280212152No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12210.30489327486840395No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11580.2891616808334249No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9480.23672303405016132No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9160.22873238311175922No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8250.20600896950567835No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7250.18103818532317187No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6510.1625598050281171No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4960.12385508954523207No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4390.1096217425612034No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)