FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926190

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926190
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences401292
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA24940.6214925789699272No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12290.30626077768806753No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11100.27660656080858825No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10650.2653927813163482No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8990.22402639474497374No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8640.21530456625100924No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7880.19636573866411489No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7170.17867288657635838No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5240.13057823230963989No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4360.10864906352481485No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)