FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926192

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926192
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences384286
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38591.0041999968773256No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23690.6164679431465107No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11330.29483249454833116No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11090.2885871460318617No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9020.2347210150773122No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7640.19881026110761257No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7630.19855003825275966No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6540.170185747073794No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4410.11475827899012714No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4190.10903337618336344No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC3880.10096646768292365No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)