FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926193

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926193
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412331
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA27470.6662123391159044No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA24150.585694502717477No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19540.4738911214533954No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT18580.45060885550686225No Hit
CAGACGTGGTTTGGTGGACGGTTTGTTAGTCTGGGTAGAAGTAG12980.3147956374854183No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT9900.2400983675736241No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9750.2364605135194783No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9380.2274871401859186No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT9350.22675956937508943No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG9070.21996890847401723No Hit
TTTAACAGTAATACCGTTGCCATTGGTGTCTTTGGTAACGCTGG7190.1743744709953896No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7030.1704940933376341No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6630.16079314919324525No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6380.1547300591030022No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA5790.14042116649002864No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5780.14017864288641893No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5380.13047769874203005No Hit
ATTACCGTTGTCGAAGGTCACGTTAGTACCGGAAGTTACCGTCT5260.12756741549871342No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5190.12586975027344538No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5060.122716943426519No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT4970.1205342309940315No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT4950.12004918378681205No Hit
TGGCGGGTTTTTCAGACGCGGTTTCGTGGACGGCTTGTTCGTCT4750.11519871171461761No Hit
GCCCAGGGTGATAGACGTCAGACCGGTCAGAGTGTCCTGCAGGC4520.10962066883159405No Hit
CGGGGTGTTACCACCGATCGTCAGAGTATCGGAGACTTTCGCAG4360.10574029117383849No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)