FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926195

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926195
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393403
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA25090.6377683952588058No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22220.5648152149322705No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19380.49262461140357344No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT17880.45449577151165604No Hit
CAGACGTGGTTTGGTGGACGGTTTGTTAGTCTGGGTAGAAGTAG12490.3174861401666993No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9910.2519045355526013No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT9730.2473290747655712No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT8780.22318080950069014No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8770.22292661723474402No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG8290.21072538846933042No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6870.17463008670498192No Hit
TTTAACAGTAATACCGTTGCCATTGGTGTCTTTGGTAACGCTGG6590.16751270325849066No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6270.15937855074821494No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6090.15480308996118486No Hit
ATTACCGTTGTCGAAGGTCACGTTAGTACCGGAAGTTACCGTCT5580.1418392843979329No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA5280.13421351641954943No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5200.1321799782919805No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5160.13116320922819602No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5080.1291296711006271No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT4980.12658774844116594No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT4920.12506259484548923No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4550.11565748100548293No Hit
GCCCAGGGTGATAGACGTCAGACCGGTCAGAGTGTCCTGCAGGC4400.11184459701629118No Hit
CGGGGTGTTACCACCGATCGTCAGAGTATCGGAGACTTTCGCAG4250.10803171302709944No Hit
TGGCGGGTTTTTCAGACGCGGTTTCGTGGACGGCTTGTTCGTCT4120.10472721356979992No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)