FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926197

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926197
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences398659
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA25790.646918795261113No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA21620.5423181215023365No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19480.48863815942948735No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT18760.47057761144236054No Hit
CAGACGTGGTTTGGTGGACGGTTTGTTAGTCTGGGTAGAAGTAG12100.3035175425614372No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9490.2380480561081024No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT9110.2285161002260077No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9100.22826525928174207No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT8800.22074003095377254No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG8450.21196059790447477No Hit
TTTAACAGTAATACCGTTGCCATTGGTGTCTTTGGTAACGCTGG7680.19264584519601965No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6910.17333109248756456No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6490.16279577282840724No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5840.14649111145113994No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5590.1402200878444987No Hit
ATTACCGTTGTCGAAGGTCACGTTAGTACCGGAAGTTACCGTCT5460.13695915556904523No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT5300.13294570046079482No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA5250.13169149573946656No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5120.1284305634640131No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4910.12316290363443444No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA4890.12266122174590315No Hit
CGGGGTGTTACCACCGATCGTCAGAGTATCGGAGACTTTCGCAG4620.11588851625073057No Hit
TGGCGGGTTTTTCAGACGCGGTTTCGTGGACGGCTTGTTCGTCT4610.11563767530646492No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT4610.11563767530646492No Hit
GCCCAGGGTGATAGACGTCAGACCGGTCAGAGTGTCCTGCAGGC4140.10384815092597934No Hit
TTTCACGTGTTCATACTTAGAAACATCGAAACCGTCCTGTTTGG4050.10159058242758849No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)