FastQCFastQC Report
Sun 21 May 2023
EGAF00007926198

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926198
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences398659
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT59731.498272960098731No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39790.9980961172330237No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA19520.48964152320654997No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19410.48688227281962776No Hit
ACCTACCTGACGCAGGTACCGCCGGAACGTG12320.3090360433352815No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG10360.259871218259214No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10060.25234598993124446No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9690.24306487499341545No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG8930.22400096322922597No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC8840.2217433947308351No Hit
GGTCTGGTTACTGCTAAAGCTGTCATCGATG7900.198164345969864No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG7040.17659202476301802No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5930.14874867994953078No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5440.13645747368051392No Hit
GAAGCAGGTGGCACCAACACCACCCCGGCGA5360.13445074612638871No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5320.1334473823493261No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG5140.1289322453525444No Hit
ATCGATGAAGACAACCCGACCGATAACGGCA5090.12767804063121616No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5020.1259221540213566No Hit
AAACAGCCAACCACCACCTCCCCGATCCACA4960.12441710835576271No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4910.12316290363443444No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC4730.11864776663765274No Hit
CTGCACGACGACGCTAACTTTCTGGAACATG4550.11413262964087104No Hit
AACCTGTCCTGGACCGCCAAAGCGGACAAGT4240.10635656036863586No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC3990.1000855367619946No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)