FastQCFastQC Report
Sun 21 May 2023
EGAF00007926200

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926200
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424512
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30370.7154096939544701No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15510.36536069651741293No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13380.3151854364540932No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9980.23509347203377057No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9860.2322666968189356No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7490.17643788632594604No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7150.16842868988391377No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6280.14793456957636061No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)