FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926202

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926202
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427435
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31120.7280639161509938No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16410.38391802262332286No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13930.3258975048837835No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10920.25547744101442327No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9660.22599927474352827No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7980.1866950530490016No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7560.17686899762536992No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6460.15113409056347749No Hit
GTAGACAAATCTACCGGTAAGCAGAACAAAA4730.11066010036613755No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)