FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007926204

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926204
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences410745
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42211.0276448891648102No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30140.7337886036348586No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15300.3724938830661359No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13000.31649807057906976No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8700.21181024723368513No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7570.1842992610987352No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6840.166526677135449No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5950.1448587323034973No Hit
GTAGACAAATCTACCGGTAAGCAGAACAAAA4180.10176630269388551No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)