FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926205

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926205
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences406238
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGATCGCCGAAGCGGCTGGATTTGGAAGTACCGGTGCCGAAAC18100.4455516224479246No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11460.2821006405112274No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11040.27176187358149656No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9300.22892983915832593No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8640.212683205411606No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7930.19520576607801338No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6840.1683742042841881No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT6100.15015828159847183No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5390.13268084226487922No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5120.12603449209576653No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5000.12308055868727198No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4810.11840349745715566No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC4370.10757240829267571No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)