FastQCFastQC Report
Sun 21 May 2023
EGAF00007926206

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926206
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences406238
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGGCGGTGGCATCGAAGCACTGGATGGCG18490.45515190602553185No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16270.400504137968383No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11120.2737311625204929No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9900.24369950620079855No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9740.23976092832280585No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9300.22892983915832593No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8690.21391401099847873No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7510.18486699914828253No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6360.15655847065020997No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6300.1550815039459627No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5780.14228112584248642No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5300.13046539220850834No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5270.1297269088563847No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5080.12504984762626833No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4690.11544956404866114No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4690.11544956404866114No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4470.11003401946642116No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4420.10880321387954844No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4180.10289534706255939No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4100.10092605812356302No Hit

[OK]Adapter Content

Adapter graph