FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926208

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926208
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences410443
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9500.2314572303584176No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9470.2307263127888647No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7460.18175483562882058No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5150.12547418277324743No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5150.12547418277324743No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4930.1201141205965262No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4880.11889592464727136No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4520.11012491381263659No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4470.10890671786338176No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)