FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926213

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926213
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences390258
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16440.4212597819903756No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG14870.38102998529178134No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG11050.28314602134997874No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11040.2828897806066756No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11020.28237729912006926No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9990.255984502559845No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9990.255984502559845No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9470.24265998390808133No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9180.23522900235229002No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9170.23497276160898686No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9170.23497276160898686No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8990.2303604282295302No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8780.2249793726201641No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8340.2137047799148256No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA8090.2072987613322469No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7900.20243018720948708No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7500.19218055747736112No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7490.191924316734058No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6870.1760373906492628No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6740.17270626098632186No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6110.15656309415822353No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5880.15066955706225113No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5650.1447760199662787No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5440.13939496435691262No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5410.13862624212700314No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5210.1335014272609402No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5150.13196398280112132No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5090.1304265383413024No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4920.1260704457051489No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG4900.1255579642185426No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4870.12478924198863317No Hit
TTTGTCCGGTTTCGGTGCCGGGGCCGGCGCTGGGGTGGAAGCAG4860.12453300124533001No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG4630.11863946414935761No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4370.11197720482347576No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC4340.11120848259356632No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4270.10941479739044427No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA4200.10762111218732223No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4190.10736487144401907No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4190.10736487144401907No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG4180.10710863070071594No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA4080.10454622326768447No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4080.10454622326768447No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG4070.1042899825243813No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4040.10352126029447187No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG4040.10352126029447187No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT4000.10249629732125927No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)