FastQCFastQC Report
Wed 31 May 2023
EGAF00007926214

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926214
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences390258
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38250.9801208431345418No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23430.6003720615592761No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16640.42638459685643854No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16150.41382880043458425No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14690.3764176519123247No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12440.3187634846691163No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10840.2777649657406126No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10600.2716151879013371No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10300.26392796560224263No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10040.25726570627636075No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9890.2534220951268135No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9800.2511159284370852No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9380.24035381721835297No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9070.2324103541759554No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8900.22805426153980185No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8250.21139861322509723No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8180.2096049280219752No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8110.20781124281885316No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7670.19653665011351465No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7560.19371800193718No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7420.19013063153093596No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6950.178087316595688No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6830.1750124276760502No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6350.1627128719974991No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6200.1588692608479519No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6070.15553813118501092No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5980.1532319644952826No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5850.14990083483234168No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5440.13939496435691262No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5420.1388824828703063No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5310.13606383469397168No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5290.1355513532073654No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5240.13427014949084964No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5090.1304265383413024No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5080.13017029759799925No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4990.12786413090827092No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4900.1255579642185426No Hit
ACCTTCGTTAGCGTAGACCAGAACTGGATCA4880.1250454827319363No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4760.12197059381229852No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4730.12120187158238908No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4710.1206893900957828No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4650.11915194563596389No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC4610.11812698266275132No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4580.11735826043284188No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4510.11556457522971983No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4410.11300216779668835No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA4250.10890231590383796No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4200.10762111218732223No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4160.10659614921410963No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4150.1063399084708065No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4130.1058274269842002No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG4100.10505870475429074No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG4030.10326501955116871No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG4030.10326501955116871No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG4000.10249629732125927No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG3940.10095885286144038No Hit
TCCATCTCTAGCAGCGAGGAAATCGTCCCAA3910.10019013063153094No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)