FastQCFastQC Report
Wed 31 May 2023
EGAF00007926215

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926215
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences413869
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18460.4460348564400813No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG15740.380313577484663No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12500.302027936376003No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11670.28197328140063643No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11330.27375812153120915No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10670.2578110464905562No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10580.255636445348649No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10520.25418671125404413No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10120.24452181729001207No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9710.23461530097687913No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9710.23461530097687913No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9340.22567527406014945No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9050.21866822593622617No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8910.21528551304881496No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA8780.21214442251050453No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8370.20223790619737164No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8160.1971638368662548No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7990.19305625693154116No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7450.1800086500800978No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6880.16623617618135206No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6760.16333670799214245No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6600.1594707504065296No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6330.15294694698080794No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6250.1510139681880015No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5960.14400692006407825No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5910.14279880831857425No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5660.13675824959105418No Hit
TTTGTCCGGTTTCGGTGCCGGGGCCGGCGCTGGGGTGGAAGCAG5560.13434202610004617No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5490.13265066965634054No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC5480.13240904730723974No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5300.1280598450234253No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5220.12612686623061886No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5170.12491875448511484No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG4650.11235439233187312No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA4600.11114628058636912No Hit
ACCTGCACCAACTACGACCGGTTCCTTCAGCGGAGTGTGCAGTT4600.11114628058636912No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG4600.11114628058636912No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4580.11066303588816752No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA4570.1104214135390667No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4540.10969654649176432No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4450.10752194534985708No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4410.10655545595345388No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG4400.10631383360435306No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4350.10510572185884906No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA4290.10365598776424426No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4270.10317274306604264No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG4230.10220625366963944No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)