FastQCFastQC Report
Wed 31 May 2023
EGAF00007926216

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926216
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences413869
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25570.6178283466507518No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18800.45425001630950856No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16770.4052006794420457No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG15760.38079682218286465No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13950.3370631769956194No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11180.2701337862946971No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11130.2689256745491931No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11030.2665094510581851No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10800.2609521370288666No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10700.2585359135378586No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10190.24621317373371768No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10030.24234721614810484No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9970.2408974820535No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9690.23413205627867756No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9600.23195745513677032No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9090.2196347153326294No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8960.216493624794319No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8590.20755359787758926No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8270.1998216827063636No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8250.19933843800816203No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8220.19861357096085958No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8050.19450599102614596No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7430.1795254053818962No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7390.178558915985493No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6700.16188697389753764No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6510.15729614926462238No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6370.15391343637721117No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6280.15173883523530393No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6060.1464231435550863No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6040.14593989885688466No Hit
ACCTTCGTTAGCGTAGACCAGAACTGGATCA5910.14279880831857425No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5780.1396577177802638No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5730.13844960603475978No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5520.13337553670364294No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5440.1314425579108365No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5360.1295095791180301No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5230.12636848857971966No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5220.12612686623061886No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5220.12612686623061886No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5120.12371064273961085No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5100.12322739804140924No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5010.12105279689950202No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4940.11936144045579639No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4930.1191198181066956No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4740.11452899347378034No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4720.11404574877557874No Hit
GTGCAGGACGCCACCGTTGGCGCAGAAAAAG4720.11404574877557874No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG4690.11332088172827633No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4650.11235439233187312No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA4640.11211276998277234No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4640.11211276998277234No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4490.10848843474626028No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG4420.10679707830255467No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG4340.10486409950974825No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG4330.10462247716064746No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG4220.10196463132053862No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG4150.100273274876833No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4150.100273274876833No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)