FastQCFastQC Report
Sun 21 May 2023
EGAF00007926217

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926217
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences396560
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17490.441042969538027No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG14520.36614888037119225No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12490.31495864434133547No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11470.28923744200121043No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10520.265281420213839No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10290.25948154125479117No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9980.25166431309259635No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9970.25141214444220294No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9840.24813395198708899No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9320.23502118216663306No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9140.23048214645955217No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8870.2236735928989308No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8740.22039540044381684No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8480.21383901553358886No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA8440.21283034093201536No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7820.19719588460762558No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7460.1881178131934638No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7310.18433528343756303No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6790.1712225136171071No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6770.17071817631632036No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6730.1697095017147468No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6370.16063143030058505No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5730.14449263667540851No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5560.140205769618721No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5480.13818842041557394No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5380.1356667339116401No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5320.1341537220092798No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5310.13390155335888643No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5270.1328928787573129No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5130.12936251765180554No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG4910.1238148073431511No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC4870.12280613274157756No Hit
TTTGTCCGGTTTCGGTGCCGGGGCCGGCGCTGGGGTGGAAGCAG4770.12028444623764373No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4600.11599757918095623No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4520.11398022997780916No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4450.11221504942505547No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG4390.11070203752269517No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG4370.11019770022190842No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4360.10994553157151503No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG4350.10969336292112164No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4210.10616300181561429No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA4140.1043978212628606No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA4110.10364131531168046No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA4080.1028848093605003No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4050.10212830340932015No Hit
ACCTGCACCAACTACGACCGGTTCCTTCAGCGGAGTGTGCAGTT3980.10036312285656647No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG3980.10036312285656647No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG3980.10036312285656647No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)