FastQCFastQC Report
Wed 31 May 2023
EGAF00007926219

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926219
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences368717
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG26310.7135553825833905No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15980.43339471735775675No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15500.42037660319431974No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG15360.41657965322998397No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC15150.4108842282834803No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14570.39515400700266057No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12700.3444376039076039No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11900.32274074696854227No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT9560.2592774404217869No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9220.25005627622268567No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8890.24110632273532276No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8840.23975026917663142No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8720.23649574063577214No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8510.23080031568926845No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG7800.21154435515585124No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC7800.21154435515585124No Hit
GCGACGACCGGCCGCAAATTCTTTAAATTCACGCAGTGCCAGCG7330.1987974517041525No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7100.1925596053341723No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6930.18794902323462168No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT6850.18577933754071552No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6550.17764301618856737No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6330.1716763805303254No Hit
TACCTGGATGTCCAGATCGAAGTAGAAACGGCGTGCCATGGCCG6160.16706579843077482No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5940.16109916277253286No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5840.15838705565515016No Hit
TTTGGAGGTGAACGGTTTACCTTTATCCGGCAGGTCTGCCATCG5690.1543188949790761No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5460.14808104860909588No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5410.1467249950504045No Hit
GGTCAGTGGATCCAGTTCGCCGCGTGCTGCACGAGCGGTCAGGT5360.14536894149171317No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5270.1429280450860687No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5220.14157199152737737No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5200.14102957010390083No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5110.1385886736982564No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG5100.13831746298651812No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4950.13424930231044407No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT4870.1320796166165379No Hit
CAGTGCACGCAGGCCTTCAGCGATGTTTTCGAACTTTGGGTTGG4820.13072356305784652No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4740.1285538773639404No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4700.1274690345169873No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA4690.127197823805249No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT4640.12584177024655765No Hit
GTAGCCAGAACCATCGGAACCGGTAACCGGAGCTGCTTTGGAGC4620.12529934882308114No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4330.11743423818267126No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4220.11445092035355028No Hit
CAGCGCGCGCAGGCCCTCAGCGATGTTTTCGAACTTCGGGTTGG4090.11092518110095277No Hit
GGTGTTGACGTGGTACGGGTTGTCATAACCCTGCTGTTCCTGGC3990.10821307398357005No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT3910.10604338828966389No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG3730.10116159547837501No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG3690.10007675263142193No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)