FastQCFastQC Report
Wed 31 May 2023
EGAF00007926220

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926220
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences368717
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36790.9977842084850983No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA34030.9229300520453355No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT25950.7037917969608127No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22620.6134786299519686No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17100.4637703170724431No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC16130.4374628780338308No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15350.4163084425182457No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG13740.37264351792838407No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13060.3542011895301817No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9570.25954865113352515No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9550.2590062297100486No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9520.2581925975748338No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9430.2557517011691894No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC8900.24137753344706103No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8640.23432605494186598No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA7740.20991709088542163No Hit
GATGGTGAACGTAACAACCAGGTTCTGGAAG7640.2072049837680389No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG7170.19445808031634015No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC7150.19391565889286363No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6970.18903386608157474No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6670.18089754472942662No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6670.18089754472942662No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6410.1738460662242316No Hit
GTGCCATTCATTCCGCCGATGGCGGATCTGC6250.16950669483641925No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6240.16923548412468098No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6100.16543853416034518No Hit
TACTTCGATGGTTATGACCAGCAGTCTGTAG5740.15567494853776745No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5580.15133557714995513No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5580.15133557714995513No Hit
TCCGCGGCCGAAAAAACCAAAGGTAACGCGA5550.1505219450147403No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5500.14916589145604894No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5490.14889468074431067No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5420.14699620576214278No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5350.14509773077997487No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5330.14455530935649835No Hit
GAACAGGGCCCGGCGGACGATCCGGGTGAGG5300.14374167722128353No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG5160.13994472725694776No Hit
CTGGACAGCCTGCGCATGGAGATGGAACGTC4980.13506293444565887No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA4940.13397809159870577No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4840.13126598448132307No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4790.12990993092263173No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA4690.127197823805249No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4680.12692661309351075No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4580.12421450597612804No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC4570.12394329526438976No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4530.12285845241743668No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4370.11851908102962436No Hit
GAACAGGGTCCGGCAGACGATCCGGGTGAAG4330.11743423818267126No Hit
GGTCAAGGTCAACAGGGTTACTACCCGATCT4030.10929791683052313No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA3860.10468733473097253No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC3850.10441612401923427No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG3770.10224643832532809No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)