FastQCFastQC Report
Wed 31 May 2023
EGAF00007926221

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926221
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences380483
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT14680.38582538510261954No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC11870.3119718883629492No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9250.24311204442774054No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8870.23312473881881715No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA8500.22340025704170752No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7470.19632940236488883No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6260.16452771871542224No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5940.15611735609738148No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG5330.1400851023567413No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG5170.13587992104772093No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4980.13088626824325922No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT4770.12536696777516998No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG4770.12536696777516998No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4640.12195025796159092No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4320.11353989534355016No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4250.11170012852085376No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4070.10696929954820582No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT3820.1003987037528615No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)