FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926222

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926222
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences380483
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36880.9692942917291968No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT15540.4084282346386041No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14820.3895049187480124No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13590.35717758743491823No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG13510.35507499678040805No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9390.24679157807313334No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9050.23785556779146508No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC8130.21367577526459788No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6920.1818740916151313No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5860.1540147654428713No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC5820.1529634701156162No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA5200.13666839254316224No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5040.13246321123414187No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG4700.12352720095247358No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4540.11932201964345318No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4510.11853354814801186No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4260.11196295235266754No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4190.11012318552997111No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC4060.10670647571639207No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT3910.10276411823918546No Hit

[OK]Adapter Content

Adapter graph