FastQCFastQC Report
Wed 31 May 2023
EGAF00007926223

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926223
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465708
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20040.4303125563657914No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18530.3978888058611834No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18510.3974593522121157No Hit
ACGCTGATCTACGTTCACGATTTTATGGCGGTCATCGCCGTTCA14060.30190591529456223No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11090.23813204840801533No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT10100.21687409277916636No Hit
CGCGGACATCTGGGTCGGCTGCATCAGGCGTTCACCAGAATCGA8750.18788597146709957No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA8200.176075996117739No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7780.16705746948731823No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT7690.1651249280665138No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA7400.15889785015503277No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6560.1408607968941912No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6430.13806934817525146No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5180.11122849510852292No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5160.11079904145945528No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5150.11058431463492144No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5000.10736341226691402No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4830.10371305624983895No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)